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TABLE OF
CONTENTS

Examples:

  1. Three Molecular Species
    Derived from Morton-Firth, C. J. (1998), Stochastic Simulation of Cell Signalling Pathways, PhD thesis, University of Cambridge, Cambridge, UK.
  2. Four Molecular Species
    Derived from Resat, H., Wiley, H.S. and D.A. Dixon (2001), Probability-Weighted Dynamic Monte Carlo Method for Reaction Kinetic Simulations, J. Phys. Chem. B, 105(44):11026-11034.
  3. Molecular Switch
    Derived from Chan, Cliburn (2002), Modeling of T Cell Activation, PhD thesis, University College London, London, UK
  4. IkB-NF-kB Interaction Signaling
    Derived from Hoffmann,A., Levchenko, A., Scott, M.L. and Baltimore, D. (2002), The IkB-NF-KB signaling module : Temporal control and selective gene activation, Science, Vol: 298, No:8, 2002
  5. Circadian Rhythms
    This is an example of a mathematical model of circadian rhythms. Circadian rhythm refers to the periodical osciallation that occurs in gene activity, physiology, and behaviour of nearly all living organisms within a period of 24 hours.